PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016455642.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 291aa    MW: 32062.2 Da    PI: 9.4078
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016455642.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73.1e-143377147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE++++++a +++  + Wk+I   +g  +t  q++s+ qky
   XP_016455642.1 33 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 77
                     789*****************77.*********.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-172783IPR009057Homeodomain-like
PROSITE profilePS5129416.2912882IPR017930Myb domain
TIGRFAMsTIGR015578.6E-193180IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.6E-73183IPR009057Homeodomain-like
SMARTSM007171.1E-113280IPR001005SANT/Myb domain
PfamPF002496.8E-123377IPR001005SANT/Myb domain
CDDcd001672.14E-93578No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0032922Biological Processcircadian regulation of gene expression
GO:0043966Biological Processhistone H3 acetylation
GO:0046686Biological Processresponse to cadmium ion
GO:0048573Biological Processphotoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MNSSSPSMAN NNSTPTDSSG KKVRKPYTIT KSRESWTEEE HDKFLEALQL FDRDWKKIED  60
FVGSKTVIQI RSHAQKYFLK VQKNGTTAHV PPPRPKRKAA HPYPQKAPKN VLVPLQASMG  120
YPSSMNSLPP GYPSWDDTSV LLNSPSGGTM PSQDEYHFQR IQADIGSKGA TLISNSGIRS  180
SSRTAPSSEL PEQSKLGSVP HGIPDFAEVY SFIGSVFDPD TKGHVQKLKE MDPINFETVL  240
LLMRNLTMNL SSPDFEPIKN VLSTYDLSTK VAGLPTGGAV KNHNDLSCQT I
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00338DAPTransfer from AT3G09600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801551.10.0PREDICTED: protein REVEILLE 8 isoform X2
RefseqXP_016455642.10.0PREDICTED: protein REVEILLE 8 isoform X1
SwissprotQ8RWU31e-124RVE8_ARATH; Protein REVEILLE 8
TrEMBLK4D3M30.0K4D3M3_SOLLC; Uncharacterized protein
STRINGSolyc10g084370.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9982478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.11e-109MYB_related family protein